PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G337700.1
Common NameB456_009G337700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 455aa    MW: 51590.9 Da    PI: 8.829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G337700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-13276318754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          +Er+RR++iN+ +++Lr l+Pk +      K++  +iL+ A+eYI +L
  Gorai.009G337700.1 276 VMERNRRKKINDQLFKLRALVPKiS------KMDRTAILTDAIEYIGDL 318
                         69*********************66......***************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-918119IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.68E-10267323No hitNo description
SuperFamilySSF474591.44E-14268334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.081269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14276335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10276318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MIVVTKTMRG FDRAVEWLRP FVDSKGWDFC VVWKLGDDPS RFIEWKDCCC SACFNVNVEK  60
DESQKPFCRD GHFQHSIRSK ACEALSHFPF AISLYAGIHG EVAMSNQPSW VNHGNPSGSQ  120
SSNVMPKDQN LIELVTSQCN AVLKQEITTG ENYAKANLDK CYNLPFSISL STFVPRIELI  180
PPISDSNSHH SLDGSHSGSS PSIEHPPFAS DSAYISQDEQ FKQLIGTYYG TKRLRCSKNV  240
PEQQARFAPD GNKSIKDKTR TTKQPAKEKF HSKNLVMERN RRKKINDQLF KLRALVPKIS  300
KMDRTAILTD AIEYIGDLLE EKKKLENELM KIDEENCEKS NLELKSTLLD KSPKDNMSAV  360
KPNQVSSSLA KMAKMEVHVE VNQLTKREFL IKLYYEHKRG SFAKLMEGID SLGLQVIDAN  420
VTTFNGKVLS MFKVEANRDF QSRKLRDFLT NLTK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438254.10.0PREDICTED: transcription factor bHLH90-like isoform X2
TrEMBLA0A0D2QSR30.0A0A0D2QSR3_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.18e-50bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]